PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla013953
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 210aa    MW: 23090.5 Da    PI: 4.9726
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla013953genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.31.9e-182171155
        AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               ++ykGVr ++ +g+Wv+eIr p   ++++r++lg++ tae Aa+a++aa ++l+g
  Cla013953 21 KKYKGVRMRS-WGSWVSEIRAP---NQKTRIWLGSYSTAEAAARAYDAALLCLKG 71
               59*****998.**********9...336************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.98E-192181No hitNo description
SuperFamilySSF541713.53E-202281IPR016177DNA-binding domain
PROSITE profilePS5103221.8382279IPR001471AP2/ERF domain
PfamPF008471.7E-112271IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-302280IPR001471AP2/ERF domain
SMARTSM003803.7E-352285IPR001471AP2/ERF domain
PRINTSPR003674.7E-92334IPR001471AP2/ERF domain
PRINTSPR003674.7E-94561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0034605Biological Processcellular response to heat
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071497Biological Processcellular response to freezing
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MVKKELANDD IHSTTLSTSK KKYKGVRMRS WGSWVSEIRA PNQKTRIWLG SYSTAEAAAR  60
AYDAALLCLK GSSANLNFPI SSSSFAHFHN FLSSNHDDNN VMSPKSIQRV AAEAAANTAF  120
FDGNVDNNTT GSNDVLPSSP LPSSSSSSSS SSVSSTSNND SFMMMEPSWF NFDDILSPKY  180
VGQMMDGTLF DPPIIDDFYE ESDIRLWSFC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-152180161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00156DAPTransfer from AT1G21910Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004140977.11e-100PREDICTED: ethylene-responsive transcription factor ERF014
SwissprotQ9SFE42e-50ERF12_ARATH; Ethylene-responsive transcription factor ERF012
TrEMBLA0A0A0KC861e-100A0A0A0KC86_CUCSA; Uncharacterized protein
STRINGPOPTR_0002s08610.12e-53(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47983156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21910.16e-36ERF family protein